MedicineWorld.Org
Your gateway to the world of medicine
Home
News
Cancer News
About Us
Cancer
Health Professionals
Patients and public
Contact Us
Disclaimer

Medicineworld.org: A Database For The Microbes

Back to research news Blogs list Cancer blog  


Subscribe To Research News RSS Feed  RSS content feed What is RSS feed?

A Database For The Microbes

A Database For The Microbes
Scientists at the Virginia Bioinformatics Institute at Virginia Tech have launched a publicly-available microbial database to host a range of microbial genome sequences.

The VBI Microbial Database (VMD), which is described in a recent article published in Nucleic Acids Research (Vol.34, D379-D381), contains genome sequence and annotation data for the plant pathogens Phytophthora sojae and Phytophthora ramorum. The purpose of the database is to make the recently completed genome sequences of these pathogens as well as powerful analytical tools widely available to scientists in one integrated resource. The work described in the paper was completed by Brett Tyler, VBI research professor and professor of plant pathology, physiology, and weed science at Virginia Tech, and VBI scientists Sucheta Tripathy, Varun Pandey, Bing Fang, and Fidel Salas.

VMD is an integrated resource that includes community annotation features, toolkits, and resources to perform complex queries of biological information. The project's scientists created a browser, which makes it easy for users to view the genome sequence data and connect to detailed annotation pages for each sequence. The community annotation interface is available for registered members to add or edit annotations.

The database will be expanded in 2006 to include genome sequences for the fungal pathogen Alternaria brassicicola and the oomycete pathogen Hyaloperonospora parasitica, both of which can infect the model plant Arabidopsis. In addition, support for proteomic and microarray data will be added, which will be linked to the functional genomic data and the genome sequences.

P. ramorum, also known as sudden oak death, is a serious fungal pathogen that has attacked and killed tens of thousands of oak trees in California and Oregon; P. sojae, the sister pathogen of P. ramorum, causes serious damage to soybean crops. Tyler and collaborators, in conjunction with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), successfully completed the genome sequences of the pathogens in 2004.

The database can be accessed by visiting http://phytophthora.vbi.vt.edu.



Source: Virginia Tech

Posted by: Scott    Source




Did you know?
Scientists at the Virginia Bioinformatics Institute at Virginia Tech have launched a publicly-available microbial database to host a range of microbial genome sequences. The VBI Microbial Database (VMD), which is described in a recent article published in Nucleic Acids Research (Vol.34, D379-D381), contains genome sequence and annotation data for the plant pathogens Phytophthora sojae and Phytophthora ramorum. The purpose of the database is to make the recently completed genome sequences of these pathogens as well as powerful analytical tools widely available to scientists in one integrated resource. The work described in the paper was completed by Brett Tyler, VBI research professor and professor of plant pathology, physiology, and weed science at Virginia Tech, and VBI scientists Sucheta Tripathy, Varun Pandey, Bing Fang, and Fidel Salas.

Medicineworld.org: A Database For The Microbes

Acute bacterial meningitis| Alzheimer's disease| Carpal tunnel syndrome| Cerebral aneurysms| Cerebral palsy| Chronic fatigue syndrome| Cluster headache| Dementia| Epilepsy seizure disorders| Febrile seizures| Guillain barre syndrome| Head injury| Hydrocephalus| Neurology| Insomnia| Low backache| Mental retardation| Migraine headaches| Multiple sclerosis| Myasthenia gravis| Neurological manifestations of aids| Parkinsonism parkinson's disease| Personality disorders| Sleep disorders insomnia| Syncope| Trigeminal neuralgia| Vertigo|

Copyright statement
The contents of this web page are protected. Legal action may follow for reproduction of materials without permission.